6SX4

Structure of C. glutamicum mycoloyltransferase A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION29325% PEG3350, 0.2M Ammonium Acetate, 0.05M Bis-Tris buffer, pH 5.5
Crystal Properties
Matthews coefficientSolvent content
2.4950.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.15α = 90
b = 170.48β = 90
c = 241.85γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2011-06-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 10.979SOLEILPROXIMA 1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.79648.699.70.2770.9895.124.29128339
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.7962.961.690.62

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.79648.57267565344499.7110.2430.24190.262451.744
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
8.713-4.358-4.355
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.825
r_dihedral_angle_4_deg21.671
r_dihedral_angle_3_deg17.85
r_lrange_it7.296
r_lrange_other7.296
r_dihedral_angle_1_deg6.65
r_mcangle_it4.624
r_mcangle_other4.624
r_scangle_it4.442
r_scangle_other4.442
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.825
r_dihedral_angle_4_deg21.671
r_dihedral_angle_3_deg17.85
r_lrange_it7.296
r_lrange_other7.296
r_dihedral_angle_1_deg6.65
r_mcangle_it4.624
r_mcangle_other4.624
r_scangle_it4.442
r_scangle_other4.442
r_mcbond_it2.822
r_mcbond_other2.82
r_scbond_it2.618
r_scbond_other2.618
r_angle_other_deg2.388
r_angle_refined_deg1.409
r_symmetry_nbd_other0.235
r_nbd_other0.229
r_nbd_refined0.204
r_xyhbond_nbd_refined0.184
r_symmetry_xyhbond_nbd_refined0.177
r_symmetry_xyhbond_nbd_other0.174
r_nbtor_refined0.168
r_symmetry_nbd_refined0.115
r_symmetry_nbtor_other0.069
r_chiral_restr0.055
r_bond_other_d0.036
r_gen_planes_other0.007
r_bond_refined_d0.006
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18056
Nucleic Acid Atoms
Solvent Atoms209
Heterogen Atoms100

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing