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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH iBET-BD1 (GSK778)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 30% PEG 300, 0.1M MES buffer
Crystal Properties Matthews coefficient Solvent content 2.26 45.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.974 α = 90 b = 52.713 β = 90 c = 32.038 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU 2018-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 26.26 95.6 0.991 21.3 2.6 15926
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 0.603 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.601 26.26 15807 821 94.778 0.169 0.1673 0.181 0.1913 0.2002 20.519
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.189 -0.285 0.474
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.09 r_dihedral_angle_4_deg 22.188 r_dihedral_angle_3_deg 11.587 r_lrange_it 7.237 r_lrange_other 6.826 r_dihedral_angle_1_deg 5.082 r_scangle_it 3.04 r_scangle_other 3.038 r_scbond_it 1.836 r_scbond_other 1.835
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.09 r_dihedral_angle_4_deg 22.188 r_dihedral_angle_3_deg 11.587 r_lrange_it 7.237 r_lrange_other 6.826 r_dihedral_angle_1_deg 5.082 r_scangle_it 3.04 r_scangle_other 3.038 r_scbond_it 1.836 r_scbond_other 1.835 r_mcangle_other 1.755 r_mcangle_it 1.754 r_angle_other_deg 1.261 r_angle_refined_deg 1.185 r_mcbond_it 1.047 r_mcbond_other 1.037 r_nbd_refined 0.2 r_symmetry_nbd_other 0.176 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.142 r_symmetry_nbd_refined 0.123 r_nbd_other 0.109 r_symmetry_xyhbond_nbd_refined 0.097 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.065 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 910 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling