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Horse cytochrome c complexed by octa-anionic calixarene
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 56% PEG 3350, 0.05 M sodium cacodylate pH 5.5 and 0.0017 M gadolinium chloride
Crystal Properties Matthews coefficient Solvent content 2.89 57.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.591 α = 90 b = 65.591 β = 90 c = 250.698 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.00 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 46.38 96.3 0.145 0.178 0.101 0.943 5.9 2.7 34903 23.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 92.6 0.316 0.4 0.243 0.739 2.6 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.502 46.38 34902 1791 96.096 0.173 0.1695 0.1472 0.2366 0.2036 25.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -14.085 -14.085 28.171
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.983 r_dihedral_angle_4_deg 27.221 r_dihedral_angle_3_deg 17.676 r_dihedral_angle_1_deg 6.722 r_lrange_it 6.378 r_angle_refined_deg 3.346 r_scangle_it 3.28 r_mcangle_it 3.155 r_scbond_it 2.217 r_mcbond_it 1.993
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.983 r_dihedral_angle_4_deg 27.221 r_dihedral_angle_3_deg 17.676 r_dihedral_angle_1_deg 6.722 r_lrange_it 6.378 r_angle_refined_deg 3.346 r_scangle_it 3.28 r_mcangle_it 3.155 r_scbond_it 2.217 r_mcbond_it 1.993 r_nbtor_refined 0.297 r_symmetry_xyhbond_nbd_refined 0.292 r_xyhbond_nbd_refined 0.245 r_nbd_refined 0.223 r_symmetry_nbd_refined 0.194 r_chiral_restr 0.129 r_ncsr_local_group_16 0.039 r_ncsr_local_group_2 0.031 r_ncsr_local_group_23 0.031 r_ncsr_local_group_8 0.03 r_ncsr_local_group_15 0.029 r_ncsr_local_group_27 0.029 r_ncsr_local_group_18 0.028 r_ncsr_local_group_26 0.027 r_ncsr_local_group_5 0.026 r_ncsr_local_group_11 0.026 r_ncsr_local_group_17 0.026 r_ncsr_local_group_14 0.025 r_ncsr_local_group_20 0.025 r_ncsr_local_group_25 0.023 r_ncsr_local_group_19 0.02 r_ncsr_local_group_22 0.02 r_ncsr_local_group_4 0.019 r_ncsr_local_group_24 0.019 r_ncsr_local_group_13 0.018 r_ncsr_local_group_28 0.018 r_ncsr_local_group_7 0.017 r_ncsr_local_group_10 0.017 r_ncsr_local_group_3 0.015 r_ncsr_local_group_6 0.014 r_ncsr_local_group_9 0.014 r_ncsr_local_group_21 0.014 r_gen_planes_refined 0.012 r_ncsr_local_group_1 0.012 r_bond_refined_d 0.011 r_ncsr_local_group_12 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6584 Nucleic Acid Atoms Solvent Atoms 472 Heterogen Atoms 920
Software Software Software Name Purpose REFMAC refinement DENZO data reduction Aimless data scaling AMoRE phasing