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Structure of the U1A variant A1-98 Y31H/Q36R/R70W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 2.2 M ammonium sulfate, 0.2 M tri-potassium citrate
Crystal Properties Matthews coefficient Solvent content 5.02 75.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.23 α = 90 b = 76.43 β = 90 c = 137.35 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.03320 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 51.075 100 0.05 0.052 1 25.8 12.8 30234
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.49 100 1.79 1.865 0.655 1.4 12.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.45 51.075 30179 1497 99.864 0.242 0.2405 0.2408 0.2734 0.2757 77.412
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.635 1.56 -0.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.648 r_dihedral_angle_3_deg 18.497 r_dihedral_angle_4_deg 17.665 r_lrange_it 14.081 r_lrange_other 14.077 r_scangle_it 11.354 r_scangle_other 11.254 r_mcangle_it 9.603 r_mcangle_other 9.6 r_scbond_it 8.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.648 r_dihedral_angle_3_deg 18.497 r_dihedral_angle_4_deg 17.665 r_lrange_it 14.081 r_lrange_other 14.077 r_scangle_it 11.354 r_scangle_other 11.254 r_mcangle_it 9.603 r_mcangle_other 9.6 r_scbond_it 8.212 r_scbond_other 8.169 r_dihedral_angle_1_deg 7.881 r_mcbond_other 7.042 r_mcbond_it 7.04 r_angle_refined_deg 1.634 r_angle_other_deg 1.244 r_symmetry_nbd_refined 0.514 r_nbd_other 0.284 r_nbd_refined 0.208 r_symmetry_nbd_other 0.197 r_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.171 r_symmetry_nbtor_other 0.095 r_chiral_restr 0.075 r_symmetry_xyhbond_nbd_refined 0.012 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2806 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing