6SO5
Homo sapiens WRB/CAML heterotetramer in complex with a TRC40 dimer
ELECTRON MICROSCOPY
Refinement
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 5.384 |
f_angle_d | 0.752 |
f_chiral_restr | 0.045 |
f_bond_d | 0.005 |
f_plane_restr | 0.005 |
Sample |
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Homo sapiens WRB/CAML heterotetramer in complex with a TRC40 dimer |
Sample Components |
ATPase ASNA1 |
Tail-anchored protein insertion receptor WRB and calcium signal-modulating cyclophilin ligand |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 225244 |
Reported Resolution (Å) | 4.2 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 (3SJA) | 2 | |||
Refinement Space | REAL | ||||
Refinement Protocol | RIGID BODY FIT | BACKBONE TRACE | |||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details | 3SJA |
Data Acquisition | |||||||||
---|---|---|---|---|---|---|---|---|---|
Detector Type | GATAN K2 QUANTUM (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 45.6 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | 800 |
Maximum Defocus (nm) | 2000 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | |
Nominal Magnification | |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
---|---|---|
Task | Software Package | Version |
PARTICLE SELECTION | Warp | |
IMAGE ACQUISITION | SerialEM | |
CTF CORRECTION | RELION | 3.0 |
MODEL FITTING | Coot | |
CLASSIFICATION | RELION | 3.0 |
RECONSTRUCTION | RELION | 3.0 |
MODEL FITTING | Coot | |
MODEL REFINEMENT | PHENIX |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | 1698096 |