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Vegetative Insecticidal Protein 1 (Vip1Ac1) from Bacillus thuringiensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 0.2 M MgCl2, 0.1 M MES, 20% w/v PEG3350
Crystal Properties Matthews coefficient Solvent content 2.79 55.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.17 α = 90 b = 176.24 β = 90 c = 48.78 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 51.29 100 0.054 0.058 0.022 0.999 16 7.3 154836 19.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.47 1.51 100 1.642 1.772 0.656 0.605 1.1 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.47 51.29 147014 7752 99.94 0.1583 0.1562 0.1977 0.2018 RANDOM 26.875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 0.35 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.407 r_dihedral_angle_4_deg 17.946 r_dihedral_angle_3_deg 14.364 r_dihedral_angle_1_deg 6.953 r_rigid_bond_restr 4.455 r_angle_refined_deg 1.707 r_angle_other_deg 1.493 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.407 r_dihedral_angle_4_deg 17.946 r_dihedral_angle_3_deg 14.364 r_dihedral_angle_1_deg 6.953 r_rigid_bond_restr 4.455 r_angle_refined_deg 1.707 r_angle_other_deg 1.493 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5714 Nucleic Acid Atoms Solvent Atoms 860 Heterogen Atoms 20
Software Software Software Name Purpose XDS data reduction Aimless data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction