6SJW | pdb_00006sjw

Structure of the self-processing module of iron-regulated FrpC of N. Meningitidis with calcium ions


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCO5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 600
23D HNCACB5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 600
33D CBCA(CO)NH5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 600
43D 1H-15N NOESY5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 600
53D HCCH-TOCSY5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 600
63D 1H-13C NOESY aromatic5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 600
72D 1H-13C HSQC aromatic5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 700
915N R25 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 850
815N R15 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 850
102D 1H-15N HSQC5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 850
112D ssNOE5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 850
163D 1H-13C NOESY aliphatic5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm303.2Bruker AVANCE III 950
152D 1H-15N HSQC5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm283.2Bruker AVANCE III 850
143D HN(CO)CA5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm283.2Bruker AVANCE III 850
133D HNCA5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm283.2Bruker AVANCE III 850
123D HNCACB5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm283.2Bruker AVANCE III 950
173D CBCA(CO)NH5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.5 mM [U-99% 13C; U-99% 15N] Self-processing module of FrpC90% H2O/10% D2O65 mM7.41 atm283.2Bruker AVANCE III 950
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III700
3BrukerAVANCE III850
4BrukerAVANCE III950
NMR Refinement
MethodDetailsSoftware
simulated annealingGROMACS
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (medoid)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7chemical shift assignmentSparky3.115Goddard
2structure calculationCYANA3.97Guntert, Mumenthaler and Wuthrich
3refinementGROMACS5.1.1Erik Lindahl, David van der Spoel, Berk Hess, Mark Abraham
4collectionTopSpin3.2Bruker Biospin
5data analysisSparky3.115Goddard
6peak pickingSparky3.115Goddard