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dARC1 capsid domain dimer, orthorhombic form at 1.7 Angstrom
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 NaCl 2.8-3.3 M, 0.1 M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 4.11 70.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.334 α = 90 b = 70.386 β = 90 c = 142.821 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2018-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.98399 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 71.41 84.1 0.093 0.029 0.998 10.3 10 48232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.7 66 1.501 0.478 0.557 1.5 9.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 71.41 43484 2241 65.38 0.1824 0.1808 0.1827 0.2128 0.2138 RANDOM 22.124
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.24 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.762 r_dihedral_angle_4_deg 15.937 r_dihedral_angle_3_deg 13.946 r_dihedral_angle_1_deg 5.751 r_angle_refined_deg 1.707 r_angle_other_deg 1.498 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.762 r_dihedral_angle_4_deg 15.937 r_dihedral_angle_3_deg 13.946 r_dihedral_angle_1_deg 5.751 r_angle_refined_deg 1.707 r_angle_other_deg 1.498 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2681 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms 5
Software Software Software Name Purpose autoPROC data scaling XDS data reduction XSCALE data scaling pointless data scaling Aimless data scaling TRUNCATE data reduction STARANISO data scaling AutoSol phasing BUCCANEER model building Coot model building REFMAC refinement PDB_EXTRACT data extraction