6S68

Structure of the Fluorescent Protein AausFP2 from Aequorea cf. australis at pH 7.6


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.629324% PEG 3350, 0.2 M sodium chloride, 0.1M HEPES pH 7.6
Crystal Properties
Matthews coefficientSolvent content
238.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.41α = 90
b = 75.13β = 90
c = 100.41γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6MCRL Transfocator, Elliptical mirror2018-06-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.976ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0644.1199.80.10.99812.7961307938
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.062.1199.70.6832.165.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTphiYFPv (Phialidium, PDB:4HE4)2.0644.111244763299.770.16830.16650.2018RANDOM34.468
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.531.112.42
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.337
r_dihedral_angle_4_deg20.307
r_dihedral_angle_3_deg14.845
r_dihedral_angle_1_deg8.015
r_angle_refined_deg1.69
r_angle_other_deg1.304
r_chiral_restr0.061
r_bond_refined_d0.009
r_gen_planes_refined0.008
r_bond_other_d0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.337
r_dihedral_angle_4_deg20.307
r_dihedral_angle_3_deg14.845
r_dihedral_angle_1_deg8.015
r_angle_refined_deg1.69
r_angle_other_deg1.304
r_chiral_restr0.061
r_bond_refined_d0.009
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1737
Nucleic Acid Atoms
Solvent Atoms148
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PDB_EXTRACTdata extraction