☰ Navigation Tabs
Crystal structure of human ATAD2 bromodomain in complex with N-(4-bromo-3-((3-methylpiperidin-1-yl)sulfonyl)phenyl)-2-(2,5-dioxoimidazolidin-1-yl)acetamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 278 0.1M trisHCl pH 7.0-8.0, 1.2-1.5M ammonium sulphate and 20-25% PEG3350
Crystal Properties Matthews coefficient Solvent content 4.07 69.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.664 α = 90 b = 79.664 β = 90 c = 137.341 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU 2013-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.547
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 137.34 99.8 19.3 10.7 15970
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.09 48.67 15113 793 99.65 0.18644 0.18353 0.1932 0.24328 0.2535 RANDOM 36.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.19 -0.38 1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.375 r_dihedral_angle_3_deg 13.509 r_long_range_B_other 12.783 r_long_range_B_refined 12.591 r_dihedral_angle_4_deg 12.226 r_scangle_other 7.357 r_dihedral_angle_1_deg 4.939 r_scbond_it 4.629 r_scbond_other 3.751 r_mcangle_it 3.628
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.375 r_dihedral_angle_3_deg 13.509 r_long_range_B_other 12.783 r_long_range_B_refined 12.591 r_dihedral_angle_4_deg 12.226 r_scangle_other 7.357 r_dihedral_angle_1_deg 4.939 r_scbond_it 4.629 r_scbond_other 3.751 r_mcangle_it 3.628 r_mcangle_other 3.627 r_mcbond_it 2.263 r_mcbond_other 2.263 r_angle_refined_deg 1.421 r_angle_other_deg 1.373 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1084 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling