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The crystal structure of glycogen phosphorylase in complex with 11
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 6.7 289 10 mM BES buffer, pH 6.7
Crystal Properties Matthews coefficient Solvent content 2.45 49.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.238 α = 90 b = 128.238 β = 90 c = 115.895 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD AGILENT ATLAS CCD 2018-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION SUPERNOVA 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 13.76 92.5 0.083 0.994 14.3 5.3 40023
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 73.8 0.597 0.802 2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.3 13.76 37912 2074 91.97 0.15281 0.15034 0.1603 0.19716 0.2024 RANDOM 26.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.36 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.311 r_dihedral_angle_4_deg 19.081 r_dihedral_angle_3_deg 14.83 r_dihedral_angle_1_deg 6.865 r_long_range_B_refined 6.008 r_long_range_B_other 6.001 r_scangle_other 4.443 r_scbond_it 2.749 r_scbond_other 2.749 r_mcangle_it 2.748
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.311 r_dihedral_angle_4_deg 19.081 r_dihedral_angle_3_deg 14.83 r_dihedral_angle_1_deg 6.865 r_long_range_B_refined 6.008 r_long_range_B_other 6.001 r_scangle_other 4.443 r_scbond_it 2.749 r_scbond_other 2.749 r_mcangle_it 2.748 r_mcangle_other 2.748 r_mcbond_it 1.72 r_mcbond_other 1.718 r_angle_refined_deg 1.436 r_angle_other_deg 1.276 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6582 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling REFMAC phasing