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LXRbeta ligand binding domain in comlpex with small molecule inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 0.1 M HEPES pH 7.5 and 18% PEG6000
Crystal Properties Matthews coefficient Solvent content 2.44 49.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.433 α = 90 b = 109.398 β = 90.878 c = 88.98 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2006-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 89.1 92.7 8.3 2 104549
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.9 54.718 76976 3875 92.254 0.216 0.2147 0.2189 0.245 0.2496 24.876
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.166 -0.117 -0.172 0.341
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.07 r_dihedral_angle_4_deg 16.948 r_dihedral_angle_3_deg 16.777 r_dihedral_angle_1_deg 5.121 r_lrange_it 4.206 r_lrange_other 4.107 r_angle_other_deg 3.65 r_scangle_it 1.794 r_scangle_other 1.756 r_mcangle_other 1.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.07 r_dihedral_angle_4_deg 16.948 r_dihedral_angle_3_deg 16.777 r_dihedral_angle_1_deg 5.121 r_lrange_it 4.206 r_lrange_other 4.107 r_angle_other_deg 3.65 r_scangle_it 1.794 r_scangle_other 1.756 r_mcangle_other 1.73 r_mcangle_it 1.729 r_angle_refined_deg 1.552 r_scbond_it 1.067 r_scbond_other 1.033 r_mcbond_it 0.996 r_mcbond_other 0.995 r_symmetry_nbd_refined 0.245 r_nbd_refined 0.231 r_symmetry_nbd_other 0.221 r_nbd_other 0.208 r_ncsr_local_group_4 0.208 r_ncsr_local_group_6 0.195 r_ncsr_local_group_1 0.187 r_nbtor_refined 0.18 r_ncsr_local_group_3 0.178 r_ncsr_local_group_2 0.173 r_ncsr_local_group_5 0.172 r_symmetry_xyhbond_nbd_refined 0.169 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.106 r_symmetry_nbtor_other 0.097 r_symmetry_xyhbond_nbd_other 0.064 r_gen_planes_other 0.017 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7570 Nucleic Acid Atoms Solvent Atoms 545 Heterogen Atoms 250
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing