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A quadruplex hybrid structure with lpp loop orientation and 5 syn residues
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.8 mM MYC4t-5s 90% H2O/10% D2O 10 mM 7 1 atm 303 Bruker AVANCE NEO 600 2 2D DQF-COSY 0.8 mM MYC4t-5s 90% H2O/10% D2O 10 mM 7 1 atm 303 Bruker AVANCE NEO 600 3 2D 1H-13C HSQC 0.8 mM MYC4t-5s 90% H2O/10% D2O 10 mM 7 1 atm 303 Bruker AVANCE NEO 600 4 2D 1H-1H NOESY 0.8 mM MYC4t-5s 100% D2O 10 mM 7 1 atm 303 Bruker AVANCE NEO 600 5 2D DQF-COSY 0.8 mM MYC4t-5s 100% D2O 10 mM 7 1 atm 303 Bruker AVANCE NEO 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE NEO 600
NMR Refinement Method Details Software simulated annealing Xplor-NIH simulated annealing Amber molecular dynamics
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin 3 Bruker Biospin 2 chemical shift assignment CcpNmr Analysis CCPN 3 structure calculation Xplor-NIH Schwieters, Kuszewski, Tjandra and Clore 4 structure calculation Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman