6R9K

A quadruplex hybrid structure with lpp loop orientation and 3 syn residues


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY0.8 mM MYC4t-3s90% H2O/10% D2O10 mM71 atm303Bruker AVANCE NEO 600
22D 1H-13C HSQC0.8 mM MYC4t-3s90% H2O/10% D2O10 mM71 atm303Bruker AVANCE NEO 600
32D DQF-COSY0.8 mM MYC4t-3s90% H2O/10% D2O10 mM71 atm303Bruker AVANCE NEO 600
42D 1H-1H NOESY0.8 mM MYC4t-3s100% D2O10 mM71 atm303Bruker AVANCE NEO 600
52D DQF-COSY0.8 mM MYC4t-3s100% D2O10 mM71 atm303Bruker AVANCE NEO 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
simulated annealingXplor-NIH
simulated annealingAmber
molecular dynamics
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number20
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingTopSpin3Bruker Biospin
2chemical shift assignmentCcpNmr AnalysisCCPN
3structure calculationXplor-NIHSchwieters, Kuszewski, Tjandra and Clore
4structure calculationAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman