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Crystal structure of transthyretin in complex with CHF4795, a flurbiprofen analogue
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 2.2 M ammonium sulfate, 0.1M KCl, 30 mM sodium phosphate, pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.32 47.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.582 α = 90 b = 85.072 β = 90 c = 64.947 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.95372 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 64.95 100 0.09 0.04 21.8 12.5 42661
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 100 0.58 0.25 6.2 12.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 42.57 40484 2130 99.97 0.17911 0.17811 0.1789 0.19823 0.2007 RANDOM 14.011
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.18 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.856 r_dihedral_angle_4_deg 17.488 r_dihedral_angle_3_deg 12.811 r_dihedral_angle_1_deg 7.198 r_long_range_B_refined 6.404 r_long_range_B_other 6.403 r_scangle_other 4.539 r_scbond_it 2.945 r_scbond_other 2.944 r_mcangle_it 2.576
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.856 r_dihedral_angle_4_deg 17.488 r_dihedral_angle_3_deg 12.811 r_dihedral_angle_1_deg 7.198 r_long_range_B_refined 6.404 r_long_range_B_other 6.403 r_scangle_other 4.539 r_scbond_it 2.945 r_scbond_other 2.944 r_mcangle_it 2.576 r_mcangle_other 2.576 r_angle_refined_deg 1.925 r_mcbond_it 1.654 r_mcbond_other 1.654 r_angle_other_deg 1.49 r_chiral_restr 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1785 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing