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Crystal structure of transthyretin in complex with CHF5075, a flurbiprofen analogue
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 2.2 M ammonium sulfate, 0.1M KCl, 30 mM sodium phosphate, pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.27 45.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.3 α = 90 b = 84.9 β = 90 c = 63.9 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.95372 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 42.45 99.9 0.04 0.025 18.7 6.5 57271
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 99.9 0.681 0.423 2.4 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 42.45 55267 2000 99.77 0.18038 0.17993 0.1886 0.19241 0.1995 RANDOM 17.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 -0.41 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.22 r_dihedral_angle_4_deg 21.555 r_dihedral_angle_3_deg 14.612 r_dihedral_angle_1_deg 6.868 r_long_range_B_refined 6.236 r_long_range_B_other 6.235 r_scangle_other 5.03 r_scbond_it 3.292 r_scbond_other 3.29 r_mcangle_it 2.809
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.22 r_dihedral_angle_4_deg 21.555 r_dihedral_angle_3_deg 14.612 r_dihedral_angle_1_deg 6.868 r_long_range_B_refined 6.236 r_long_range_B_other 6.235 r_scangle_other 5.03 r_scbond_it 3.292 r_scbond_other 3.29 r_mcangle_it 2.809 r_mcangle_other 2.809 r_angle_refined_deg 1.929 r_mcbond_it 1.831 r_mcbond_other 1.826 r_angle_other_deg 1.504 r_chiral_restr 0.098 r_bond_refined_d 0.017 r_gen_planes_refined 0.012 r_bond_other_d 0.005 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1785 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing