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Crystal structure of LPOR (Synechocystis) complexed with NADPH at 1.87A resolution.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 293 10MM ZNSO4,0.2M LI3CITRATE, 30% PEG3350, EVAPORATION, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.27 45.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.96 α = 90 b = 72.89 β = 90 c = 155.99 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97851 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 28.57 95.2 0.097 11.8 5.6 51836
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.91 86.5 0.881 2.1 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.87 28.57 49150 2642 94.9 0.171 0.17 0.1796 0.199 0.2066 RANDOM 24.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.47 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.123 r_dihedral_angle_4_deg 14.876 r_dihedral_angle_3_deg 12.963 r_dihedral_angle_1_deg 6.325 r_long_range_B_refined 5.33 r_long_range_B_other 4.975 r_scangle_other 2.014 r_mcangle_it 1.868 r_mcangle_other 1.868 r_angle_refined_deg 1.472
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.123 r_dihedral_angle_4_deg 14.876 r_dihedral_angle_3_deg 12.963 r_dihedral_angle_1_deg 6.325 r_long_range_B_refined 5.33 r_long_range_B_other 4.975 r_scangle_other 2.014 r_mcangle_it 1.868 r_mcangle_other 1.868 r_angle_refined_deg 1.472 r_angle_other_deg 1.194 r_scbond_it 1.175 r_scbond_other 1.175 r_mcbond_it 1.062 r_mcbond_other 1.06 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4761 Nucleic Acid Atoms Solvent Atoms 416 Heterogen Atoms 97
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing