6R28
Structure of peptide P7, which binds Cdc42 and inhibits effector interactions.
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | TOCSY | 5 mg/mL peptide | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE III 800 |
2 | COSY | 5 mg/mL peptide | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE III 800 |
3 | NOESY | 5 mg/mL peptide | 90% H2O/10% D2O | 50 mM | 7 | 1 atm | 298 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 35 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CcpNmr Analysis | 2 | CCPN |
2 | structure calculation | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
3 | structure calculation | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
4 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |