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Glycogen Phosphorylase b in complex with 4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 6.8 289 10 mM BES buffer
Crystal Properties Matthews coefficient Solvent content 2.45 49.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.309 α = 90 b = 128.309 β = 90 c = 115.807 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD AGILENT ATLAS CCD 2017-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION NOVA 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 13.82 90.2 0.068 0.988 12.2 3.6 36628
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 87 0.451 0.772 2 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.4 13.82 34808 1797 95.36 0.14978 0.14738 0.1572 0.19649 0.1991 RANDOM 27.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.04 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.446 r_dihedral_angle_4_deg 15.392 r_dihedral_angle_3_deg 14.162 r_long_range_B_refined 6.878 r_long_range_B_other 6.878 r_dihedral_angle_1_deg 6.077 r_scangle_other 5.464 r_scbond_it 3.472 r_scbond_other 3.472 r_mcangle_it 3.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.446 r_dihedral_angle_4_deg 15.392 r_dihedral_angle_3_deg 14.162 r_long_range_B_refined 6.878 r_long_range_B_other 6.878 r_dihedral_angle_1_deg 6.077 r_scangle_other 5.464 r_scbond_it 3.472 r_scbond_other 3.472 r_mcangle_it 3.33 r_mcangle_other 3.33 r_angle_other_deg 2.279 r_mcbond_it 2.137 r_mcbond_other 2.133 r_angle_refined_deg 1.75 r_chiral_restr 0.135 r_bond_other_d 0.035 r_bond_refined_d 0.014 r_gen_planes_other 0.006 r_gen_planes_refined 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6590 Nucleic Acid Atoms Solvent Atoms 241 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling