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Streptomyces lividans Ccsp mutant - H111A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6EI0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.5 M Ammonium sulfate, pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.65 53.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.276 α = 90 b = 62.202 β = 90 c = 65.169 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.979 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.18 65.28 98.1 0.056 0.061 0.023 0.998 17.6 6.3 86182
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.18 1.2 81.6 0.809 0.951 0.491 0.61 1.2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6EI0 1.18 65.25 81782 4301 98.01 0.1827 0.1821 0.1882 0.194 0.2 RANDOM 20.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.02 -3.89 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.25 r_dihedral_angle_4_deg 20.603 r_dihedral_angle_3_deg 15.483 r_rigid_bond_restr 4.635 r_dihedral_angle_1_deg 3.927 r_angle_other_deg 1.603 r_angle_refined_deg 1.399 r_chiral_restr 0.075 r_bond_refined_d 0.006 r_gen_planes_refined 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.25 r_dihedral_angle_4_deg 20.603 r_dihedral_angle_3_deg 15.483 r_rigid_bond_restr 4.635 r_dihedral_angle_1_deg 3.927 r_angle_other_deg 1.603 r_angle_refined_deg 1.399 r_chiral_restr 0.075 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1696 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 39
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction MOLREP phasing