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Human CSNK2A2 bound to ERB-041
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3OFM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 20% (w/v) PEG10000, 0.1M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.23 44.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.719 α = 90 b = 114.139 β = 90.04 c = 133.75 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 86.82 99.8 0.21 3.8 3.3 153463
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 99.7 0.32 2.1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3OFM 1.7 86.8 145745 7529 99.7 0.26459 0.26321 0.29116 0.2543 RANDOM 15.532
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 -0.18 0.3 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.055 r_dihedral_angle_4_deg 20.884 r_dihedral_angle_3_deg 13.861 r_dihedral_angle_1_deg 6.343 r_long_range_B_refined 3.873 r_long_range_B_other 3.848 r_scangle_other 2.743 r_mcangle_it 2.229 r_mcangle_other 2.229 r_scbond_it 1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.055 r_dihedral_angle_4_deg 20.884 r_dihedral_angle_3_deg 13.861 r_dihedral_angle_1_deg 6.343 r_long_range_B_refined 3.873 r_long_range_B_other 3.848 r_scangle_other 2.743 r_mcangle_it 2.229 r_mcangle_other 2.229 r_scbond_it 1.78 r_scbond_other 1.78 r_mcbond_it 1.45 r_mcbond_other 1.44 r_angle_refined_deg 1.372 r_angle_other_deg 0.932 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10757 Nucleic Acid Atoms Solvent Atoms 552 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing