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Human CSNK2A1 bound to ERB-041
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PE1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 10% PEG6000, 2M sodium chloride
Crystal Properties Matthews coefficient Solvent content 3.17 61.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.938 α = 90 b = 126.938 β = 90 c = 127.089 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 89.81 100 0.07 14.4 8 61130
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 100 0.98 1.9 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3PE1 2.1 89.81 57989 3069 99.99 0.19807 0.19604 0.2005 0.23538 0.2412 RANDOM 53.464
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.42 1.42 -2.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.959 r_dihedral_angle_4_deg 17.895 r_dihedral_angle_3_deg 16.389 r_long_range_B_other 9.655 r_long_range_B_refined 9.642 r_scangle_other 7.373 r_dihedral_angle_1_deg 7.15 r_mcangle_other 6.131 r_mcangle_it 6.13 r_scbond_it 4.722
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.959 r_dihedral_angle_4_deg 17.895 r_dihedral_angle_3_deg 16.389 r_long_range_B_other 9.655 r_long_range_B_refined 9.642 r_scangle_other 7.373 r_dihedral_angle_1_deg 7.15 r_mcangle_other 6.131 r_mcangle_it 6.13 r_scbond_it 4.722 r_scbond_other 4.721 r_mcbond_it 4.196 r_mcbond_other 4.189 r_angle_refined_deg 1.22 r_angle_other_deg 0.878 r_chiral_restr 0.065 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5551 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing