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Solid-state NMR structure of outer membrane protein AlkL in DMPC lipid bilayers
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D hCANH 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 2 3D hCONH 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 3 3D hcoCAcoNH 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 4 3D hcaCBcaNH 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 5 3D hcaCBcacoNH 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 6 3D hNCAHa 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 7 3D hNcoCAHa 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 8 3D hCOCAHa 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 9 3D hCOnCAHa 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 10 3D HCCH-TOCSY 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 15 3D hNHH BASS-SD 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 16 3D hNNH BASS-SD 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 17 3D hCCH BASS-SD 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 18 3D hNHH RFDR 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 19 3D hCHH RFDR 0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 1000 11 3D hCANH 0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 800 12 3D hCONH 0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 800 13 3D hcoCAcoNH 0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 800 14 3D hCOcaNH 0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 800 20 4D HNNH RFDR 0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL Water 20 mM 7 1 atm 303 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 2 Bruker AVANCE III 1000 3 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 1 chemical shift assignment Sparky Goddard 2 chemical shift assignment CcpNmr Analysis CCPN 5 data analysis TALOS Cornilescu, Delaglio and Bax 3 structure calculation CYANA Guntert, Mumenthaler and Wuthrich