6QWR | pdb_00006qwr

Solid-state NMR structure of outer membrane protein AlkL in DMPC lipid bilayers

SOLID-STATE NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D hCANH	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
2	3D hCONH	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
3	3D hcoCAcoNH	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
4	3D hcaCBcaNH	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
5	3D hcaCBcacoNH	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
6	3D hNCAHa	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
7	3D hNcoCAHa	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
8	3D hCOCAHa	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
9	3D hCOnCAHa	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
10	3D HCCH-TOCSY	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
15	3D hNHH BASS-SD	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
16	3D hNNH BASS-SD	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
17	3D hCCH BASS-SD	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
18	3D hNHH RFDR	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
19	3D hCHH RFDR	0.5 w/w [U-13C; U-15N] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 1000
11	3D hCANH	0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 800
12	3D hCONH	0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 800
13	3D hcoCAcoNH	0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 800
14	3D hCOcaNH	0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 800
20	4D HNNH RFDR	0.5 w/w [U-13C; U-15N; U-2H] Outer membrane protein AlkL	Water	20 mM	7	1 atm	303	Bruker AVANCE III 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
2	Bruker	AVANCE III	1000
3	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
simulated annealing		CYANA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
1	chemical shift assignment	Sparky		Goddard
2	chemical shift assignment	CcpNmr Analysis		CCPN
5	data analysis	TALOS		Cornilescu, Delaglio and Bax
3	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich