X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6FE2 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.52941.0 M DI-AMMONIUM HYDROGEN PHOSPHATE, 0.1 M SODIUM ACETATE PH 4.5, PROTEIN 10 MG/ML, 5-10 MM INHIBITOR (STOCK SOLUTION WAS 100 MM INHIBITOR DISSOLVED IN 100% DIMETHYL SULFOXIDE)
Crystal Properties
Matthews coefficientSolvent content
3.4564.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 151.73α = 90
b = 151.73β = 90
c = 174.4γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-11-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.91840BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9675.8699.20.0789.7410663127.91
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.962.079923.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6FE21.9675.86101004561699.220.174370.172620.20535RANDOM36.478
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.470.230.47-1.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.561
r_dihedral_angle_4_deg17.48
r_dihedral_angle_3_deg13.988
r_long_range_B_refined7.63
r_long_range_B_other7.559
r_dihedral_angle_1_deg6.799
r_scangle_other5.672
r_mcangle_it4.404
r_mcangle_other4.403
r_scbond_it3.815
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.561
r_dihedral_angle_4_deg17.48
r_dihedral_angle_3_deg13.988
r_long_range_B_refined7.63
r_long_range_B_other7.559
r_dihedral_angle_1_deg6.799
r_scangle_other5.672
r_mcangle_it4.404
r_mcangle_other4.403
r_scbond_it3.815
r_scbond_other3.815
r_mcbond_it3.171
r_mcbond_other3.167
r_angle_refined_deg1.725
r_angle_other_deg1.365
r_chiral_restr0.074
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.008
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7750
Nucleic Acid Atoms
Solvent Atoms735
Heterogen Atoms154

Software

Software
Software NamePurpose
REFMACrefinement
SCALAdata scaling