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Structure of rabbit G-actin in complex with chivosazole A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YXQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.5 M lithium chloride, 100 mM Tris(hydroxymethyl)aminomethane hydrochloride (Tris-HCl), 28 % (w/v) polyethylenglycol 6000, pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.48 50.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.54 α = 90 b = 78.619 β = 115.11 c = 77.055 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2017-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 49.2 98.8 0.99 7 3.6 30437
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 95.6 0.47 0.98 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1YXQ 2.4 49.16 28923 1523 98.47 0.238 0.2364 0.2393 0.2683 0.2682 RANDOM 55.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.55 -0.45 0.18 1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.55 r_dihedral_angle_4_deg 17.865 r_dihedral_angle_3_deg 14.784 r_dihedral_angle_1_deg 5.468 r_mcangle_it 3.097 r_angle_other_deg 2.308 r_angle_refined_deg 1.947 r_mcbond_it 1.792 r_mcbond_other 1.79 r_chiral_restr 0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.55 r_dihedral_angle_4_deg 17.865 r_dihedral_angle_3_deg 14.784 r_dihedral_angle_1_deg 5.468 r_mcangle_it 3.097 r_angle_other_deg 2.308 r_angle_refined_deg 1.947 r_mcbond_it 1.792 r_mcbond_other 1.79 r_chiral_restr 0.116 r_bond_other_d 0.035 r_bond_refined_d 0.014 r_gen_planes_other 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5618 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 188
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling PHASER phasing