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PCNA complex with Cdt1 N-terminal PIP-box peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 300 15% (w/v) PEG 400, 100 mM calcium acetate, 100 mM MES/HCl
Crystal Properties Matthews coefficient Solvent content 2.57 52.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.585 α = 90 b = 143.173 β = 90 c = 173.592 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.0003 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 47.72 99.3 7.6 3.4 26813
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.63 99.2 0.647 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.4 46.21 25428 1333 99.11 0.20826 0.20595 0.25308 0.2124 RANDOM 77.834
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 -1.17 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.51 r_dihedral_angle_4_deg 22.131 r_dihedral_angle_3_deg 21.516 r_dihedral_angle_1_deg 9.003 r_long_range_B_refined 6.636 r_long_range_B_other 6.636 r_scangle_other 3.907 r_mcangle_it 3.758 r_mcangle_other 3.758 r_scbond_it 2.258
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.51 r_dihedral_angle_4_deg 22.131 r_dihedral_angle_3_deg 21.516 r_dihedral_angle_1_deg 9.003 r_long_range_B_refined 6.636 r_long_range_B_other 6.636 r_scangle_other 3.907 r_mcangle_it 3.758 r_mcangle_other 3.758 r_scbond_it 2.258 r_scbond_other 2.258 r_mcbond_it 2.168 r_mcbond_other 2.168 r_angle_refined_deg 1.702 r_angle_other_deg 1.195 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12122 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing