X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP277.150.10 M Bis-Tris pH 6.20, 0.10 M Na-Chloride, 1.10 M (NH4)2-Sulfate, 0.05 M Mg-Chloride, 0.1 M Na-Acetate, pH 4.60, 2 M (NH4)2-Sulfate

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.63α = 90
b = 148.63β = 90
c = 47.29γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293PIXELDECTRIS PILATUS 2M2015-11-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE MASSIF-11.541790ESRFMASSIF-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
122099.90.1540.1620.0510.99411.71040693
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.111000.660.6980.2250.8159.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT22038518216199.850.13670.1350.1682RANDOM33.854
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.170.090.17-0.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.978
r_dihedral_angle_4_deg18.368
r_dihedral_angle_3_deg13.983
r_dihedral_angle_1_deg4.754
r_angle_refined_deg1.57
r_angle_other_deg0.971
r_chiral_restr0.098
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.978
r_dihedral_angle_4_deg18.368
r_dihedral_angle_3_deg13.983
r_dihedral_angle_1_deg4.754
r_angle_refined_deg1.57
r_angle_other_deg0.971
r_chiral_restr0.098
r_bond_refined_d0.013
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2058
Nucleic Acid Atoms
Solvent Atoms681
Heterogen Atoms72

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
ADDREFdata reduction
ACORNphasing