6PX8
Dg3b in Weaponisation 'on the fly': Convergent recruitment of knottin and defensin scaffolds as neurotoxins in the venom of assassin fly Dolopus genitalis (Diptera: Asilidae)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mg/mL 0 Dg3b | 90% H2O/10% D2O | 0 M | 4 | 1 Pa | 298 | Bruker AVANCE 600 |
2 | 2D 1H-1H NOESY | 1 mg/mL 0 Dg3b | 90% H2O/10% D2O | 0 M | 4 | 1 Pa | 298 | Bruker AVANCE 600 |
3 | 2D 1H-13C HSQC | 1 mg/mL 0 Dg3b | 90% H2O/10% D2O | 0 M | 4 | 1 Pa | 298 | Bruker AVANCE 600 |
4 | 2D 1H-15N HSQC | 1 mg/mL 0 Dg3b | 90% H2O/10% D2O | 0 M | 4 | 1 Pa | 298 | Bruker AVANCE 600 |
5 | 2D DQF-COSY | 1 mg/mL 0 Dg3b | 90% H2O/10% D2O | 0 M | 4 | 1 Pa | 298 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | TopSpin | Bruker Biospin | |
2 | chemical shift assignment | CcpNmr Analysis | CCPN | |
3 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |