6PTW | pdb_00006ptw

NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state B)

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N TROSY	0.2 mM [Ile, Leu C-delta-13C; Val C-gamma-13C; U-15N; U-2H] KRAS, 0.2 mM [U-12C; U-14N; U-1H] RBD-CRD, 0.4 mM [U-12C; U-14N; U-1H] MSP	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
2	2D 1H-13C HMQC	0.2 mM [Ile, Leu C-delta-13C; Val C-gamma-13C; U-15N; U-2H] KRAS, 0.2 mM [U-12C; U-14N; U-1H] RBD-CRD, 0.4 mM [U-12C; U-14N; U-1H] MSP	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
3	2D 1H-15N TROSY	0.2 mM [U-12C; U-14N; U-1H] KRAS, 0.2 mM [Ile, Leu C-delta-13C; Val C-gamma-13C; U-15N; U-2H] RBD-CRD, 0.4 mM [U-12C; U-14N; U-1H] MSP	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
4	2D 1H-13C HMQC	0.2 mM [U-12C; U-14N; U-1H] KRAS, 0.2 mM [Ile, Leu C-delta-13C; Val C-gamma-13C; U-15N; U-2H] RBD-CRD, 0.4 mM [U-12C; U-14N; U-1H] MSP	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
5	2D 1H-15N TROSY	0.2 mM [Ile, Leu C-delta-13C; Val C-gamma-13C; U-15N] RBD-CRD, 0.2 mM [U-12C; U-14N; U-1H] KRAS Q43C	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
10	2D 1H-13C HMQC	0.2 mM [Ile, Leu C-delta-13C; Val C-gamma-13C; U-15N] RBD-CRD, 0.2 mM [U-12C; U-14N; U-1H] KRAS Q43C	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
9	2D 1H-15N TROSY	0.2 mM [Ile, Leu C-delta-13C; Val C-gamma-13C; U-15N] RBD-CRD, 0.2 mM [U-12C; U-14N; U-1H] KRAS N-term C	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
11	2D 1H-13C HMQC	0.2 mM [Ile, Leu C-delta-13C; Val C-gamma-13C; U-15N] RBD-CRD, 0.2 mM [U-12C; U-14N; U-1H] KRAS N-term C	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
12	3D edited NOESY	0.5 mM [U-15N; Ile C-delta-13C; Met methyl-13C] KRAS, 0.5 mM [Leu C-delta-13C; Val C-gamma-13C] RBD-CRD	90% H2O/10% D2O	150 mM	5.5	1 atm	308	Bruker AVANCE III 700
13	3D HNCO	0.5 mM [U-13C; U-15N] RBD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
14	3D HNCACO	0.5 mM [U-13C; U-15N] RBD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
15	3D HNCACB	0.5 mM [U-13C; U-15N] RBD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
16	3D CBCA(CO)NH	0.5 mM [U-13C; U-15N] RBD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
17	3D HNCA	0.5 mM [U-13C; U-15N] RBD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
18	3D HN(CO)CA	0.5 mM [U-13C; U-15N] RBD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
19	3D HNCO	0.5 mM [U-13C; U-15N] CRD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
20	3D HNCACO	0.5 mM [U-13C; U-15N] CRD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
21	3D HNCACB	0.5 mM [U-13C; U-15N] CRD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
22	3D CBCA(CO)NH	0.5 mM [U-13C; U-15N] CRD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
23	3D HNCA	0.5 mM [U-13C; U-15N] CRD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700
24	3D HN(CO)CA	0.5 mM [U-13C; U-15N] CRD	90% H2O/10% D2O	450 mM	5.5	1 atm	298	Bruker AVANCE III 700

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	700

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	3000
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger A. T. et.al.
2	collection	TopSpin		Bruker Biospin
3	chemical shift assignment	Sparky		Goddard
4	peak picking	Sparky		Goddard
5	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7	data analysis	Sparky		Goddard
8	structure calculation	HADDOCK		Bonvin