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Rhinovirus C15 complexed with domains I and II of receptor CDHR3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5K0U
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.69 f_angle_d 0.741 f_chiral_restr 0.052 f_bond_d 0.01 f_plane_restr 0.005
Sample Complex of rhinovirus C15 with domain I and domain II (EC1-2) from human CDHR3 Sample Components Rhinovirus C domain I and domain II (EC1-2) from human CDHR3
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument GATAN CRYOPLUNGE 3 Cryogen Name NITROGEN Sample Vitrification Details 3 second blotting time. Instrument placed in BSL2 hood.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 9607 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5K0U) Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value 100 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 32
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 81000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION Leginon CTF CORRECTION CTFFIND 4 MODEL FITTING Coot MODEL REFINEMENT Coot MODEL REFINEMENT PHENIX INITIAL EULER ASSIGNMENT JALIGN FINAL EULER ASSIGNMENT JALIGN CLASSIFICATION RELION 1.4 RECONSTRUCTION J3DR
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 22981