6POR
Antimicrobial lasso peptide ubonodin
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 9 mg/mL Ubonodin | 95% H2O/5% D2O | 0 M | 7 | 1 atm | 295.2 | Bruker AVANCE III 800 |
2 | 2D 1H-1H TOCSY | 4.6 mg/mL Ubonodin | 95% H2O/5% D2O | 0 M | 7 | 1 atm | 295.2 | Bruker AVANCE III 800 |
3 | 2D 1H-1H COSY | 9 mg/mL Ubonodin | 95% H2O/5% D2O | 0 M | 7 | 1 atm | 295.2 | Bruker AVANCE III 800 |
4 | 2D 1H-1H NOESY | 9 mg/mL Ubonodin | 95% H2O/5% D2O | 0 M | 7 | 1 atm | 295.2 | Bruker AVANCE III 800 |
5 | 2D 1H-1H NOESY | 4.6 mg/mL Ubonodin | 95% H2O/5% D2O | 0 M | 7 | 1 atm | 295.2 | Bruker AVANCE III 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | CYANA | |
molecular dynamics | GROMACS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | MestreLab (Mnova / MestReNova / MestReC) | 11.0 | Mestrelab Research |
2 | structure calculation | CYANA | 2.0 | Guntert, Mumenthaler and Wuthrich |
3 | refinement | GROMACS | HERMAN BERENDSEN'S GROUP |