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Complete LOV domain from the LOV-HK sensory protein from Brucella abortus (mutant C69S, construct 15-155)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3T50
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 294 15% (w/v) PEG 3350 + 0.1 M sodium citrate, pH 5.2
Crystal Properties Matthews coefficient Solvent content 2.55 51.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.27 α = 90 b = 95.86 β = 90 c = 107.59 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M KIRKPATRICK-BAEZ PAIR OF BIMORPH MIRRORS 2016-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9786 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.34 48.63 99.4 0.154 0.997 11.6 7.1 29308 39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.34 2.49 96.7 0.624 0.506 3.3 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3T50 2.34 48.63 27840 1466 99.42 0.22909 0.22743 0.2327 0.26071 0.2627 RANDOM 39.838
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.96 -0.28 -2.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.804 r_dihedral_angle_3_deg 17.987 r_dihedral_angle_4_deg 13.364 r_long_range_B_other 8.482 r_long_range_B_refined 8.481 r_dihedral_angle_1_deg 6.897 r_scangle_other 6.296 r_mcangle_it 4.987 r_mcangle_other 4.986 r_scbond_other 3.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.804 r_dihedral_angle_3_deg 17.987 r_dihedral_angle_4_deg 13.364 r_long_range_B_other 8.482 r_long_range_B_refined 8.481 r_dihedral_angle_1_deg 6.897 r_scangle_other 6.296 r_mcangle_it 4.987 r_mcangle_other 4.986 r_scbond_other 3.93 r_scbond_it 3.928 r_mcbond_it 3.09 r_mcbond_other 3.089 r_angle_refined_deg 1.274 r_angle_other_deg 0.437 r_chiral_restr 0.059 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3900 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 124
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing MxCuBE data collection Coot model building