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Crystal structure of Human HUWE1 WWE domain in complex with ADPR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6MIW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 1.4M NaCitrate, and 0.1M Tris-HCL pH7.5
Crystal Properties Matthews coefficient Solvent content 2.24 45.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.423 α = 90 b = 50.423 β = 90 c = 128.412 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 43.67 97.8 0.074 0.082 0.032 0.997 11.3 6 11221
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 99.5 0.528 0.575 0.221 0.847 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6MIW 2.1 43.67 10669 550 96.59 0.2106 0.208 0.2175 0.2597 0.2677 RANDOM 41.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 -0.25 -0.51 1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.556 r_dihedral_angle_4_deg 20.417 r_dihedral_angle_3_deg 13.816 r_dihedral_angle_1_deg 7.362 r_angle_refined_deg 1.439 r_angle_other_deg 1.248 r_chiral_restr 0.057 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.556 r_dihedral_angle_4_deg 20.417 r_dihedral_angle_3_deg 13.816 r_dihedral_angle_1_deg 7.362 r_angle_refined_deg 1.439 r_angle_other_deg 1.248 r_chiral_restr 0.057 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1205 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PDB_EXTRACT data extraction PHASER phasing