☰ Navigation Tabs
SOLUTION STRUCTURE OF THE COMPLEX OF MUTANT VEK50[RH1/AA] AND PLASMINOGEN KRINGLE 2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.0 mM [U-99% 13C; U-99% 15N] plasminogen kringle 2, 1.0 mM VEK50[RH1/AA], 20 mM [U-2H] Bis-Tris-d19, 2 ug/mL DSS, 2 ug/mL sodium azide 90% H2O/10% D2O 20 mM 6.8 1 atm 298 Bruker AVANCE 800 2 2D 1H-15N HSQC 1 mM [U-99% 13C; U-99% 15N] VEK50[RH1/AA], 1 mM plasminogen kringle 2, 20 mM [U-2H] Bis-Tris-d19, 2 ug/mL DSS, 2 ug/mL sodium azide 90% H2O/10% D2O 20 mM 6.8 1 atm 298 Bruker AVANCE 800 3 3D CBCA(CO)NH 1 mM [U-99% 13C; U-99% 15N] VEK50[RH1/AA], 1 mM plasminogen kringle 2, 20 mM [U-2H] Bis-Tris-d19, 2 ug/mL DSS, 2 ug/mL sodium azide 90% H2O/10% D2O 20 mM 6.8 1 atm 298 Bruker AVANCE 800 4 3D C(CO)NH 1 mM [U-99% 13C; U-99% 15N] VEK50[RH1/AA], 1 mM plasminogen kringle 2, 20 mM [U-2H] Bis-Tris-d19, 2 ug/mL DSS, 2 ug/mL sodium azide 90% H2O/10% D2O 20 mM 6.8 1 atm 298 Bruker AVANCE 800 5 3D HNCO 1 mM [U-99% 13C; U-99% 15N] VEK50[RH1/AA], 1 mM plasminogen kringle 2, 20 mM [U-2H] Bis-Tris-d19, 2 ug/mL DSS, 2 ug/mL sodium azide 90% H2O/10% D2O 20 mM 6.8 1 atm 298 Bruker AVANCE 800 6 3D HNCACB 1 mM [U-99% 13C; U-99% 15N] VEK50[RH1/AA], 1 mM plasminogen kringle 2, 20 mM [U-2H] Bis-Tris-d19, 2 ug/mL DSS, 2 ug/mL sodium azide 90% H2O/10% D2O 20 mM 6.8 1 atm 298 Bruker AVANCE 800 7 3D HNCA 1 mM [U-99% 13C; U-99% 15N] VEK50[RH1/AA], 1 mM plasminogen kringle 2, 20 mM [U-2H] Bis-Tris-d19, 2 ug/mL DSS, 2 ug/mL sodium azide 90% H2O/10% D2O 20 mM 6.8 1 atm 298 Bruker AVANCE 800 8 3D C(CO)NH 1.0 mM [U-99% 13C; U-99% 15N] plasminogen kringle 2, 1.0 mM VEK50[RH1/AA], 20 mM [U-2H] Bis-Tris-d19, 2 ug/mL DSS, 2 ug/mL sodium azide 90% H2O/10% D2O 20 mM 6.8 1 atm 298 Bruker AVANCE 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH simulated annealing HADDOCK
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 chemical shift assignment Sparky Goddard 4 structure calculation CS-ROSETTA Shen, Vernon, Baker and Bax 5 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 6 refinement HADDOCK Bonvin