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Crystal Structure of the Ternary Complex of KRIT1 bound to both the Rap1 GTPase and HKi1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 20-25% PEG 3,350, 100 mM Tris, pH 8.5, 100 mM KCl
Crystal Properties Matthews coefficient Solvent content 2.31 46.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.35 α = 90 b = 77.41 β = 91.64 c = 58.62 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.97741 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 58.6 99.5 0.042 0.999 17.84 4.1 51111
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.86 0.911 0.773
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.754 58.596 51091 2555 99.498 0.229 0.2268 0.2308 0.264 0.2691 38.448
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.042 0.028 0.037 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.736 r_dihedral_angle_4_deg 16.12 r_dihedral_angle_3_deg 14.702 r_dihedral_angle_1_deg 6.579 r_lrange_it 4.513 r_lrange_other 4.455 r_mcangle_it 2.658 r_mcangle_other 2.658 r_scangle_it 2.372 r_scangle_other 2.372
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.736 r_dihedral_angle_4_deg 16.12 r_dihedral_angle_3_deg 14.702 r_dihedral_angle_1_deg 6.579 r_lrange_it 4.513 r_lrange_other 4.455 r_mcangle_it 2.658 r_mcangle_other 2.658 r_scangle_it 2.372 r_scangle_other 2.372 r_mcbond_it 1.51 r_mcbond_other 1.507 r_scbond_it 1.373 r_scbond_other 1.373 r_angle_other_deg 1.153 r_angle_refined_deg 1.146 r_symmetry_xyhbond_nbd_refined 0.28 r_symmetry_nbd_refined 0.213 r_nbd_refined 0.182 r_symmetry_nbd_other 0.177 r_nbtor_refined 0.153 r_nbd_other 0.152 r_xyhbond_nbd_refined 0.126 r_symmetry_nbtor_other 0.077 r_chiral_restr_other 0.07 r_chiral_restr 0.043 r_metal_ion_refined 0.02 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3839 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing