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HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 29
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 16% PEG6000
0.10 M KCl
0.10 M MES pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.67 54.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.998 α = 90 b = 109.407 β = 90 c = 142.592 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.77 86.8 99.1 0.052 0.06 16.32 4 36583
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.77 3.02 99.3 0.599 0.684 2.25 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT NONE 2.77 86.8 35828 755 99.09 0.2205 0.2192 0.2873 0.2646 RANDOM 97.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.95 2.2 -6.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.197 r_dihedral_angle_4_deg 15.475 r_dihedral_angle_3_deg 14.059 r_dihedral_angle_1_deg 5.427 r_angle_refined_deg 1.106 r_angle_other_deg 0.876 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.197 r_dihedral_angle_4_deg 15.475 r_dihedral_angle_3_deg 14.059 r_dihedral_angle_1_deg 5.427 r_angle_refined_deg 1.106 r_angle_other_deg 0.876 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8776 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling MOLREP phasing XDS/XSCALE data collection