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Solution structure of MLL4 PHD6 domain in complex with histone H4K16ac peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCACB 2.5 mM [U-13C; U-15N] MLL4 PHD6, 7.5 mM histone H4K16ac (11-21) peptide 93% H2O/7% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 2 3D CBCA(CO)NH 2.5 mM [U-13C; U-15N] MLL4 PHD6, 7.5 mM histone H4K16ac (11-21) peptide 93% H2O/7% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 3 3D C(CO)NH 2.5 mM [U-13C; U-15N] MLL4 PHD6, 7.5 mM histone H4K16ac (11-21) peptide 93% H2O/7% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 4 3D HBHA(CO)NH 2.5 mM [U-13C; U-15N] MLL4 PHD6, 7.5 mM histone H4K16ac (11-21) peptide 93% H2O/7% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 5 3D HNCA 2.5 mM [U-13C; U-15N] MLL4 PHD6, 7.5 mM histone H4K16ac (11-21) peptide 93% H2O/7% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 6 3D H(CCO)NH 2.5 mM [U-13C; U-15N] MLL4 PHD6, 7.5 mM histone H4K16ac (11-21) peptide 93% H2O/7% D2O 100 mM 7.0 1 atm 298 Varian INOVA 600 9 3D NOESY-HSQC 2.5 mM [U-13C; U-15N] MLL4 PHD6, 7.5 mM histone H4K16ac (11-21) peptide 93% H2O/7% D2O 100 mM 7.0 1 atm 298 Varian INOVA 900 8 3D filtered NOESY 2.5 mM [U-13C; U-15N] MLL4 PHD6, 7.5 mM histone H4K16ac (11-21) peptide 93% H2O/7% D2O 100 mM 7.0 1 atm 298 Varian INOVA 900 7 2D filtered TOCSY 2.5 mM [U-13C; U-15N] MLL4 PHD6, 7.5 mM histone H4K16ac (11-21) peptide 93% H2O/7% D2O 100 mM 7.0 1 atm 298 Varian INOVA 900
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 900
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 15 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 chemical shift assignment CcpNmr Analysis CCPN 3 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 4 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman