SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H,15N-HSQC NOESY8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Varian VNS 800
23D 1H,13C-HSQC NOESY aliphatic8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Varian VNS 800
33D 1H,13C-HSQC NOESY aromatic8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Varian VNS 800
42D 1H-15N HSQC8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 600
52D 1H-13C HSQC aliphatic8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 600
62D 1H-13C HSQC aromatic8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Varian VNS 800
73D CBCA(CO)NH8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 600
83D HNCACB8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 600
93D HNCO8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 600
103D C(CO)NH8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 600
113D HBHA(CO)NH8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 600
123D HCCH-TOCSY aliphatic8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 600
133D H(CCO)NH8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 600
142D (HB)CB(CGCD)HD aromatic8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Varian VNS 800
152D (HB)CB(CGCDCE)HDHE aromatic8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Varian VNS 800
163D HCCH-TOCSY aromatic8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Varian VNS 600
203D 1H,15N-HSQC NOESY 1H,13C-HSQC8.25 mg/mL U-15N; U-13C; NA-H MYDGF, 9 mM NA sodium phosphate, 135 mM NA sodium chloride, 15 uM NA DSS, 0.02 % w/v NA sodium azide90% H2O/10% D2O135 (NaCl) mM61 atm298Bruker AVANCE III 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianVNS800
2BrukerAVANCE III600
3BrukerAVANCE III900
4VarianVNS600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsexplicit water refinementPONDEROSA-C/S
molecular dynamicsexplicit water refinementX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR4.2Varian
2collectionTopSpin3.5Bruker Biospin
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4chemical shift assignmentNMRFAM-SPARKYW. Lee, M. Tonelli and J.L. Markley
5chemical shift assignmentI-PINEW. Lee, A. Bahrami, H. Dashti, H.R. Eghbalnia, M. Tonelli, W.M. Westler, J.L. Markley
6peak pickingNMRFAM-SPARKYW. Lee, M. Tonelli and J.L. Markley
7structure calculationPONDEROSA-C/SW. Lee, J.L. Stark, J.L. Markley
8structure calculationTALOS-NShen and Bax
9structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
10refinementPyMOLSchroedinger, Inc.
11refinementPONDEROSA-C/SW. Lee, J.L. Stark, J.L. Markley
12refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore