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Murine TRIM28 Bbox1 domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 291 2.7 M Ammonium sulfate, pH 6.0
Crystal Properties Matthews coefficient Solvent content 1.99 38.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.012 α = 90 b = 51.459 β = 90 c = 72.884 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2015-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42.04 100 0.267 0.072 0.997 10.3 14.3 17060 14.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 100 3.95 1.075 0.391 0.97 14.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 42.04 16157 855 99.99 0.18181 0.18039 0.1924 0.20764 0.2172 RANDOM 25.632
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.17 0.84 1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.836 r_sphericity_free 28.791 r_sphericity_bonded 21.509 r_dihedral_angle_4_deg 16.554 r_dihedral_angle_3_deg 14.41 r_dihedral_angle_1_deg 6.54 r_long_range_B_refined 5.009 r_long_range_B_other 4.936 r_scangle_other 4.493 r_mcangle_it 3.847
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.836 r_sphericity_free 28.791 r_sphericity_bonded 21.509 r_dihedral_angle_4_deg 16.554 r_dihedral_angle_3_deg 14.41 r_dihedral_angle_1_deg 6.54 r_long_range_B_refined 5.009 r_long_range_B_other 4.936 r_scangle_other 4.493 r_mcangle_it 3.847 r_mcangle_other 3.846 r_scbond_it 3.294 r_scbond_other 3.289 r_mcbond_it 2.948 r_mcbond_other 2.941 r_rigid_bond_restr 1.652 r_angle_refined_deg 1.194 r_angle_other_deg 0.952 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 666 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXCD phasing