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NMR solution structure of vicilin-buried peptide-8 (VBP-8)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 2 mg/mL VBP-8 90% H2O/10% D2O 0 mM 4 ambient 298 Bruker AVANCE III 700 2 2D 1H-1H NOESY 2 mg/mL VBP-8 90% H2O/10% D2O 0 mM 4 ambient 298 Bruker AVANCE III 700 3 2D 1H-15N HSQC 2 mg/mL VBP-8 90% H2O/10% D2O 0 mM 4 ambient 298 Bruker AVANCE III 700 4 2D 1H-13C HSQC 2 mg/mL VBP-8 90% H2O/10% D2O 0 mM 4 ambient 298 Bruker AVANCE III 700 5 2D 1H-1H NOESY 2 mg/mL VBP-8 90% H2O/10% D2O 0 mM 4 ambient 288 Bruker AVANCE III 700 6 2D 1H-1H NOESY 2 mg/mL VBP-8 90% H2O/10% D2O 0 mM 4 ambient 293 Bruker AVANCE III 700 7 2D 1H-1H NOESY 2 mg/mL VBP-8 90% H2O/10% D2O 0 mM 4 ambient 303 Bruker AVANCE III 700 8 2D 1H-1H NOESY 2 mg/mL VBP-8 90% H2O/10% D2O 0 mM 4 ambient 308 Bruker AVANCE III 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 700
NMR Refinement Method Details Software simulated annealing Calculated using torsion and dynamics then refined and energy minimised in explicit solvent. CNS
NMR Ensemble Information Conformer Selection Criteria structures with acceptable covalent geometry Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 4 Bruker Biospin 2 processing TopSpin 4 Bruker Biospin 3 chemical shift assignment CARA Keller and Wuthrich 4 peak picking CARA Keller and Wuthrich 5 structure calculation CYANA 3.9 Guntert, Mumenthaler and Wuthrich 6 refinement CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read