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TAS-120 in reversible binding mode with FGFR1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5UR1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 MPEG 5000, sodium cacodylate, ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.26 45.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 208.8 α = 90 b = 49.157 β = 106.1 c = 64.684 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2018-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 100 97.8 0.999 12.7 7 41723
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.06 90.4 0.926 2.2 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5UR1 2 47.33 39758 1964 97.57 0.19606 0.19434 0.2058 0.22984 0.2396 RANDOM 42.725
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 -0.12 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.998 r_dihedral_angle_4_deg 14.931 r_dihedral_angle_3_deg 13.367 r_long_range_B_other 7.828 r_long_range_B_refined 7.824 r_dihedral_angle_1_deg 6.579 r_scangle_other 6.465 r_mcangle_it 4.929 r_mcangle_other 4.929 r_scbond_it 4.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.998 r_dihedral_angle_4_deg 14.931 r_dihedral_angle_3_deg 13.367 r_long_range_B_other 7.828 r_long_range_B_refined 7.824 r_dihedral_angle_1_deg 6.579 r_scangle_other 6.465 r_mcangle_it 4.929 r_mcangle_other 4.929 r_scbond_it 4.394 r_scbond_other 4.393 r_mcbond_it 3.531 r_mcbond_other 3.524 r_angle_refined_deg 1.414 r_angle_other_deg 0.982 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4046 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing