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B. pseudomallei KatG crystallized in the presence of benzoyl hydrazide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MWV PDBID 1MWV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.1 293 MPD, 0.1 M sodium citrate, 50 mM benzoyl hydrazide
Crystal Properties Matthews coefficient Solvent content 3.28 62.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.91 α = 90 b = 115.79 β = 90 c = 175.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD mirrors 2009-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.98 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.994 34.91 94.7 0.12 0.135 0.062 8 4.4 131010
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 92.8 0.612 0.612 0.691 0.315 1.2 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDBID 1MWV 2 34.91 124459 6469 94.41 0.1522 0.1505 0.1618 0.1838 0.1919 RANDOM 24.243
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 1.41 -0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.241 r_dihedral_angle_4_deg 18.561 r_dihedral_angle_3_deg 13.74 r_dihedral_angle_1_deg 6.867 r_angle_refined_deg 1.462 r_angle_other_deg 1.372 r_chiral_restr 0.071 r_gen_planes_refined 0.015 r_gen_planes_other 0.01 r_bond_refined_d 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.241 r_dihedral_angle_4_deg 18.561 r_dihedral_angle_3_deg 13.74 r_dihedral_angle_1_deg 6.867 r_angle_refined_deg 1.462 r_angle_other_deg 1.372 r_chiral_restr 0.071 r_gen_planes_refined 0.015 r_gen_planes_other 0.01 r_bond_refined_d 0.009 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10998 Nucleic Acid Atoms Solvent Atoms 1425 Heterogen Atoms 122
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction REFMAC phasing