6MI5

NMR solution structure of lanmodulin (LanM) complexed with yttrium(III) ions


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-13C NOESY aliphatic1.26 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
23D 1H-15N NOESY1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
33D HNCACB1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
43D CBCA(CO)NH1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
53D HNCO1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
63D HN(CA)CO1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
73D HCCH-TOCSY1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
83D H(CCO)NH1.26 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
92D 1H-15N HSQC1.14 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
102D 1H-13C HSQC1.26 mM [U-99% 13C; U-99% 15N] Lanmodulin90% H2O/10% D2O46mM mM7.01 atm298Bruker AVANCE III 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
molecular dynamicsNOE and TALOS restraintsAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with acceptable covalent geometry
Conformers Calculated Total Number12
Conformers Submitted Total Number12
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2chemical shift assignmentARIALinge, O'Donoghue and Nilges
4peak pickingSparkyGoddard
5refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
6structure calculationAmber14Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman