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Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 1907)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 1.8-2.1 M AMMONIUM SULFATE, 0.2 M
SODIUM CHLORIDE, 0.1 M SODIUM CACODYLATE, PH 6.2-6.8, VAPOR
DIFFUSION, SITTING DROP, TEMPERATURE 298K
Crystal Properties Matthews coefficient Solvent content 3.93 68.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.64 α = 90 b = 106.13 β = 90 c = 207.55 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2015-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 103.775 91 5.6 5 39797
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 103.77 37736 2004 90.84 0.22795 0.22668 0.2285 0.25154 0.2516 RANDOM 47.961
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3 -0.79 -2.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.812 r_dihedral_angle_3_deg 14.344 r_dihedral_angle_4_deg 14.166 r_long_range_B_refined 8.953 r_long_range_B_other 8.952 r_dihedral_angle_1_deg 5.748 r_mcangle_it 3.96 r_mcangle_other 3.96 r_scangle_other 3.9 r_angle_other_deg 3.648
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.812 r_dihedral_angle_3_deg 14.344 r_dihedral_angle_4_deg 14.166 r_long_range_B_refined 8.953 r_long_range_B_other 8.952 r_dihedral_angle_1_deg 5.748 r_mcangle_it 3.96 r_mcangle_other 3.96 r_scangle_other 3.9 r_angle_other_deg 3.648 r_mcbond_it 2.33 r_mcbond_other 2.329 r_scbond_it 2.253 r_scbond_other 2.253 r_angle_refined_deg 1.323 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8399 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction Aimless data scaling PHASER phasing