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C. albicans actin interacting protein Aip5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6ABR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 0.1M Tris pH 7.4,
0.2M calcium acetate,
12.5% PEG 3000
Crystal Properties Matthews coefficient Solvent content 4.27 71.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.116 α = 90 b = 95.116 β = 90 c = 74.119 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER X 16M 2019-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.953700 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 50 91.9 1 30.51 30.94 5823 83.02
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.75 0.84
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6ABR 2.65 47.6 5241 882 99.95 0.26538 0.25852 0.30573 0.2832 RANDOM 90.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.91 1.46 2.91 -9.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.787 r_dihedral_angle_3_deg 19.74 r_long_range_B_refined 18.618 r_dihedral_angle_4_deg 18.381 r_mcangle_it 13.959 r_scbond_it 10.72 r_mcbond_it 10.188 r_dihedral_angle_1_deg 8.779 r_angle_refined_deg 1.604 r_chiral_restr 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.787 r_dihedral_angle_3_deg 19.74 r_long_range_B_refined 18.618 r_dihedral_angle_4_deg 18.381 r_mcangle_it 13.959 r_scbond_it 10.72 r_mcbond_it 10.188 r_dihedral_angle_1_deg 8.779 r_angle_refined_deg 1.604 r_chiral_restr 0.12 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 729 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing