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Co- Carbonic Anhydrase II pH 7.8 0 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5YUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.08 40.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.305 α = 90 b = 41.224 β = 104.157 c = 72.047 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2019-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.9793 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30.002 96 0.092 0.099 0.036 0.993 24.3 7.6 72609
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 93.3 0.607 0.651 0.235 0.84 3.2 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5YUK 1.2 30 72478 3710 96.019 0.122 0.12 0.12 0.1497 0.1499 14.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.037 -0.1 0.015 0.064
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.165 r_dihedral_angle_2_deg 36.171 r_dihedral_angle_4_deg 25.397 r_dihedral_angle_3_deg 12.732 r_sphericity_bonded 12.699 r_dihedral_angle_1_deg 7.111 r_rigid_bond_restr 6.152 r_lrange_it 4.996 r_lrange_other 4.606 r_scangle_other 4.306
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.165 r_dihedral_angle_2_deg 36.171 r_dihedral_angle_4_deg 25.397 r_dihedral_angle_3_deg 12.732 r_sphericity_bonded 12.699 r_dihedral_angle_1_deg 7.111 r_rigid_bond_restr 6.152 r_lrange_it 4.996 r_lrange_other 4.606 r_scangle_other 4.306 r_scangle_it 4.305 r_scbond_other 3.837 r_scbond_it 3.833 r_mcangle_other 3.227 r_mcangle_it 3.191 r_angle_refined_deg 2.644 r_mcbond_it 2.435 r_mcbond_other 2.374 r_angle_other_deg 1.344 r_nbd_other 0.341 r_symmetry_nbd_refined 0.312 r_nbd_refined 0.287 r_chiral_restr 0.236 r_symmetry_xyhbond_nbd_refined 0.223 r_symmetry_nbd_other 0.194 r_nbtor_refined 0.19 r_xyhbond_nbd_refined 0.138 r_symmetry_nbtor_other 0.091 r_symmetry_xyhbond_nbd_other 0.062 r_bond_refined_d 0.031 r_gen_planes_refined 0.015 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing