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Zn- Carbonic Anhydrase II pH 7.8 20 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5YUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.1 41.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.369 α = 90 b = 41.442 β = 104.049 c = 72.133 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2019-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.9793 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 96.2 0.068 0.073 0.027 0.998 29.8 7.4 73208
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 92.9 0.669 0.72 0.263 0.856 3.6 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5YUK 1.2 30 73183 3748 96.118 0.114 0.1128 0.1127 0.1418 0.1416 14.193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.032 -0.065 0.059 0.005
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.123 r_dihedral_angle_2_deg 33.682 r_dihedral_angle_4_deg 23.139 r_sphericity_bonded 13.443 r_dihedral_angle_3_deg 11.742 r_dihedral_angle_1_deg 7.093 r_lrange_it 6.289 r_rigid_bond_restr 6.079 r_lrange_other 5.583 r_mcangle_other 4.514
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.123 r_dihedral_angle_2_deg 33.682 r_dihedral_angle_4_deg 23.139 r_sphericity_bonded 13.443 r_dihedral_angle_3_deg 11.742 r_dihedral_angle_1_deg 7.093 r_lrange_it 6.289 r_rigid_bond_restr 6.079 r_lrange_other 5.583 r_mcangle_other 4.514 r_mcangle_it 4.504 r_scangle_it 4.014 r_scangle_other 4.013 r_mcbond_it 3.379 r_scbond_it 3.281 r_scbond_other 3.281 r_mcbond_other 3.181 r_angle_refined_deg 2.423 r_angle_other_deg 1.209 r_symmetry_nbd_refined 0.312 r_nbd_refined 0.303 r_nbd_other 0.231 r_chiral_restr 0.194 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.186 r_symmetry_xyhbond_nbd_refined 0.157 r_xyhbond_nbd_refined 0.13 r_symmetry_nbtor_other 0.086 r_metal_ion_refined 0.07 r_bond_refined_d 0.028 r_gen_planes_refined 0.015 r_symmetry_xyhbond_nbd_other 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 367 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing