6LDH
REFINED CRYSTAL STRUCTURE OF DOGFISH M4 APO-LACTATE DEHYDROGENASE
X-RAY DIFFRACTION
Crystallization
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.88 | 57.26 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 146.8 | α = 90 |
b = 146.8 | β = 90 |
c = 155.4 | γ = 90 |
Symmetry | |
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Space Group | F 4 2 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray |
Refinement
Statistics | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | Mean Isotropic B | ||||||||||
X-RAY DIFFRACTION | 2 | 8 | 0.202 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
RMS Deviations | |
---|---|
Key | Refinement Restraint Deviation |
p_planar_tor | 4.8 |
p_xhyhbond_nbd | 0.314 |
p_multtor_nbd | 0.298 |
p_singtor_nbd | 0.237 |
p_chiral_restr | 0.169 |
p_planar_d | 0.056 |
p_angle_d | 0.046 |
p_bond_d | 0.026 |
p_plane_restr | 0.008 |
p_angle_deg |
Non-Hydrogen Atoms Used in Refinement | |
---|---|
Non-Hydrogen Atoms | Number |
Protein Atoms | 2545 |
Nucleic Acid Atoms | |
Solvent Atoms | 286 |
Heterogen Atoms | 10 |
Software
Software | |
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Software Name | Purpose |
PROLSQ | refinement |