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GluK3 receptor complex with UBP301
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6JFY
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.774 f_angle_d 1.211 f_chiral_restr 0.063 f_plane_restr 0.01 f_bond_d 0.006
Sample GluK3 complex with agonist Kainate
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details Multiple application, blotted for 3 seconds
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 27997 Reported Resolution (Å) 10.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6JFY) Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 16.73
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TECNAI ARCTICA Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION cryoSPARC v1 IMAGE ACQUISITION RELION 2.1 IMAGE ACQUISITION Gctf v1.06 IMAGE ACQUISITION UCSF Chimera 1.14 IMAGE ACQUISITION PHENIX 1.16-3549 CTF CORRECTION Gctf v1.06 RECONSTRUCTION cryoSPARC v1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 46106