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Hydra-1ubq de nova designed by Hydra based on ubiquitin
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 2 3D HNCO 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 3 3D HN(CA)CO 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 4 3D HNCA 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 5 3D HN(CO)CA 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 6 3D CBCA(CO)NH 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 7 3D HNCACB 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 8 2D 1H-13C HSQC 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 9 2D 1H-13C HSQC 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 100% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 11 2D 1H-13C HSQC 0.6 mM [U-10% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 700 13 2D 1H-13C HSQC aromatic 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 10 3D 15N-NOESY-HSQC 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 12 3D 13C-NOESY 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 14 3D 13C-NOESY 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 100% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 15 3D 13C-aromatic-NOESY 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 16 3D HCCH-TOCSY 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 17 3D H(C)CH-TOCOSY 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 100% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600 18 3D HBHA(CO)NH 0.6 mM [U-99% 13C; U-99% 15N] Hydra-1ubq 90% H2O/10% D2O 50 mM 6.5 1 bar 298 Varian UNITYPLUS 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian UNITYPLUS 600 2 Varian UNITYPLUS 700
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CYANA 2.1 Guntert P. 2 chemical shift assignment Sparky Goddard 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking XEASY Bartels et al.